PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_08505 AO353_08505 FAD-linked oxidase (464 amino acids)

SeqID: AO353_08505 AO353_08505 FAD-linked oxidase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595514: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_08505 AO353_08505 FAD-linked oxidase
MTNPALIEELKTLVEPGKVLTDADSLNAYGKDWTKHFAPAPTAIVFPKTTEQVQAIVRWA
NEHKIALVPSGGRTGLSAAAVAANGEVVVSFDYMNQILDVNLTDRTAVCQPGVVTEQLQN
RAEEHGLYYPVDFASAGSSQIGGNIGTNAGGIKVIRYGMTRNWVAGMKVVTGKGDLLELN
RDLIKNATGYDLRQLFIGAEGTLGFVVEATMRLDRAPKNLTAMVLGTADFDSIMPVLHAF
QSKLDLTAFEFFSDKALAKVLARGDVPAPFESDCPFYALLEFEATTEEVANHALETFEHC
VEEGWVLDGVMSQSESQLQNLWKLREYISETISHWTPYKNDISVTVSKVPAFLKEVDAIV
GEHYPDFEIVWFGHIGDGNLHLNILKPENLSKDEFFAKCATVNKWVFETVEKYNGSISAE
HGVGMTKRDYLTYSRSPVEIEYMKAVKAVFDPNGIMNPGKIFAV