PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_09000 FitnessBrowser__pseudo3_N2E3:AO353_09000 (464 amino acids)

SeqID: AO353_09000 FitnessBrowser__pseudo3_N2E3:AO353_09000
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600456: argininosuccinate lyase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_09000 FitnessBrowser__pseudo3_N2E3:AO353_09000
MSTDKTNQSWGGRFSEPVDAFVARFTASVTFDQRLYRHDIMGSVAHATMLAKVGVLTDAE
RDSIIDGLKTIQSEIEAGTFDWRIDLEDVHMNIEARLTDRIGVTGKKLHTGRSRNDQVAT
DIRLWLRDEIDLILGEITRLQKGLLEQAERESGTIMPGFTHLQTAQPVTFGHHMLAWFEM
LSRDYERLVDCRKRTNRMPLGSAALAGTTYPIDRELTAQLLGFDAVGGNSLDNVSDRDFA
IEFCSAASIAMMHLSRFSEELVLWTSAQFQFIDLPDRFCTGSSIMPQKKNPDVPELVRGK
SGRVFGALMGLLTLMKGQPLAYNKDNQEDKEPLFDAADTLRDSLRAFADMIPAIKPKHAI
MREAALRGFSTATDLADYLVRRGLPFRDCHEIVGHAVKYGVETGKDLAEMSLEELRKFSD
QIEQDVFAVLTLEGSVNARNHIGGTAPAQVKAAVVRGQALLASR