PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_09235 FitnessBrowser__pseudo3_N2E3:AO353_09235 (465 amino acids)

SeqID: AO353_09235 FitnessBrowser__pseudo3_N2E3:AO353_09235
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600515: phosphomannomutase AlgC[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_09235 FitnessBrowser__pseudo3_N2E3:AO353_09235
MSTPTRVAPKFPDSIFRAYDIRGTVPEFLNAETAYWLGRAIGAQSLAQDEPNVSVGRDGR
LSGPELVEQLIQGLYDSGCHVSDVGLVPTPALYYAANVLAGKSGVMLTGSHNPSNYNGFK
IVIAGDTLANEQIQALHDRLKTNNLSSGKGSITKVEILDRYTAEIVQDIKLARRLKVVVD
CGNGAAGVIAPQLIQALNCEVIPLFCDVDGNFPNHHPDPGKPENLVDLIAKVKETNADLG
LAFDGDGDRVGVVTNTGDIVFPDRLLMLFAKDVVARNPDAEIIFDVKCTRRLTPLIKEYG
GRPLMWKTGHSLIKKKMKQTGALLAGEMSGHIFFKERWFGFDDGIYSAARLLEILSREKS
TAQELFETFPNDISTPEINIHVTEESKFSIIDALHDARWGEGAELTTIDGVRVDYAKGWG
LVRASNTTPVLVLRFEADNDAELQRIKDVFHTQLKRVAPDLQLPF