PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_11640 FitnessBrowser__pseudo3_N2E3:AO353_11640 (269 amino acids)

SeqID: AO353_11640 FitnessBrowser__pseudo3_N2E3:AO353_11640
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 128372: Lipoprotein 28 precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_11640 FitnessBrowser__pseudo3_N2E3:AO353_11640
MKNNLLTLPVKALALAFGLFSSMTFATDAPLKIGTTAAFAIPLEAAVEEAGKQGLKVELV
EFSDWIAPNVSLASGDIDVNYFQHIPFLENAKAAAGFDLVPFAPGIINNVGLYSKKYKSF
DELPEGASVAIANDPINSGRGLQLLAKAGLITLKSGVGYKATEDDIVANPKKLKILQVEA
VQLVRAYDDADLVQGYPAYIRLAKTFDAGSALLFDGLDHKEYVIQFVIQPKSKTDPRLIK
FVDIYQHSPVVRAALDKAHGKLYQAGWEG