PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_17725 FitnessBrowser__pseudo3_N2E3:AO353_17725 (512 amino acids)

SeqID: AO353_17725 FitnessBrowser__pseudo3_N2E3:AO353_17725
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_17725 FitnessBrowser__pseudo3_N2E3:AO353_17725
MSQAKKIVIADAPLRWQDVVAVARHGAVLELSAQTWARIDNAQAIVQHIVVSGERAYGVN
TGLGALCNVSLQGEQLSQLSRNTLLSHACGVGAPLTDEQTRSIMCAAIINYSHGKSGLHR
QVVEALLALLNRGITPQVPSQGSVGYLTHMAHIGISLLGVGQVSYRGQIVPAQQALAEEG
LKPVQLGAKDGLCLVNGTPCMTGLSCLALADATRLIQWADVIGAMSFEAQRGQIDAFDAE
IIALKPHPGMQQVGINLRGLLDGSEVIASSKGIRTQDALSIRSIPQVHGAARDQLDHATR
QIETELNSATDNPLLLGTPDNYRVMSQANPHGQSVALAADLLAIAMAEIGSIAERRLDRL
INPHVSGLPAFLVSNPGVNSGMMIVQYVAASLCAENRQLAQPAVLDNYVTSGLQEDHLSM
GTNAALKLHRALENCTQILAIEYLLAAQAFEFLKADFLKGPCFGAGTEVAWRLLRERVPA
YDQDRWLAPDIASAASVLKDPQLLQTALPSLH