PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_20635 FitnessBrowser__pseudo3_N2E3:AO353_20635 (360 amino acids)

SeqID: AO353_20635 FitnessBrowser__pseudo3_N2E3:AO353_20635
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12644451: 3-isopropylmalate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_20635 FitnessBrowser__pseudo3_N2E3:AO353_20635
MSKQILILPGDGIGPEIMTEAVKVLELANDKFALDFELSHDVIGGAAIDKHGVPLADETL
ARARAADAVLLGAVGGPKWDTIERDIRPERGLLKIRAQLGLFGNLRPAILYPQLAEASSL
KAEIVAGLDILIVRELTGGIYFGAPRGVRELENGERQAYDTLPYSESEIRRIARVGFDMA
RVRGKKLCSVDKANVLASSQLWREIVEQVAKDYPDVELSHMYVDNAAMQLVRAPKQFDVI
VTDNLFGDILSDEASMLTGSIGMLPSASLDANNKGMYEPCHGSAPDIAGKGIANPLATIL
SVSMMLRYSFNQLVAADAIEKAVSLVLDQGLRTGDIWSPGCVKVGTQEMGDAVVAALRNL