PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_21135 FitnessBrowser__pseudo3_N2E3:AO353_21135 (325 amino acids)

SeqID: AO353_21135 FitnessBrowser__pseudo3_N2E3:AO353_21135
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600647: oxidoreductase Rmd[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_21135 FitnessBrowser__pseudo3_N2E3:AO353_21135
MKFLVVGGAGYIGSHMVKQLLRAGHEPVVADNFSTGHRGALMGGRLVELDIADAQALDVL
FAGQHFDAVFHFASFTQVGESVTEPAKYYQNNLAGTLTLLQAVVRAGVKNFIFSSSAAIY
GDPVYVPIDEEHPKAAINPYGRSKWMVEQMLEDFDRAYGLKSVCLRYFNAAGADPEGQLG
ERREPETHLLPLILQAASGRRTTITVYGRDYDTPDGTCIRDYIHVVDLVAAHALAVNYLL
AGGASTALNLGNGQGFSVQQVIDTARAVTGQGISVSEAPRRVGDPPRLVADPRMANTLLG
WQPQYASLEQIVAHAWSWEQKYPWH