PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_21310 AO353_21310 glycolate oxidase subunit GlcD (499 amino acids)

SeqID: AO353_21310 AO353_21310 glycolate oxidase subunit GlcD
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_21310 AO353_21310 glycolate oxidase subunit GlcD
MNILYDERIDGALPPVDKDALLNALREQLPELDILYREEELKPYECDGLSAYRTTPMLVL
LPRYVEQVQAVLKLCHAHRVPVVARGAGTGLSGGALPLEKGVLLVMARFNQILHIDPAAR
TARVQPGVRNLAISQAVAPLGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNVL
KLEVLTIEGEHLTLGSDALDSAGLDLLALFNGSEGLLGIITEVTVKLLPKPQAAKVLLAS
FDSVEKAGGAVAEIIAAGIIPAGLEMMDNLALRAAEDFVHAGYPVDAEAILLCELDGVEA
DVRDDCLRVRAVLERAGASEVRQARDEAERVKFWAGRKAAFPAIGRLSPDYYCMDGTIPR
RELPRVLKGIAELASEYGLRVANVFHAGDGNMHPLILFDANQPGELERTEALGGKILELC
VKVGGSITGEHGVGREKINQMCAQFNSDELTVFHAIKIAFDAKGLLNPGKNIPTLHRCAE
FGAMHVHGGQLPFPDLERF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory