PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_21615 FitnessBrowser__pseudo3_N2E3:AO353_21615 (1236 amino acids)

SeqID: AO353_21615 FitnessBrowser__pseudo3_N2E3:AO353_21615
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_21615 FitnessBrowser__pseudo3_N2E3:AO353_21615
MSDRSARLHVLKQALKERILILDGGMGTMIQSFKLEEQDYRGKRFADWPSDVKGNNDLLV
LSRPDVIGAIEKQYLDAGADILETNTFNATQVSQADYGMQGLAYELNVEGARLARKVADA
KTLETPDKPRFVAGVLGPTSRTCSLSPDVNNPGYRNVTFDELVENYTEATKGLIEGGADL
ILIETIFDTLNAKAAIFAVQGVFEEVGFELPIMISGTITDASGRTLSGQTTEAFWNSIAH
AKPISVGLNCALGARELRPYLEELSNKASTYVSAHPNAGLPNEFGEYDELPVETAKVIEE
FAQSGFLNIVGGCCGTTPGHIEAIAKAVAGYAPRQIPDIPKACRLSGLEPFTIDRSSLFV
NVGERTNITGSAKFARLIREDNYTEALEVALQQVEAGAQVIDINMDEGMLDSKKAMVTFL
NLIAGEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEQFIHHAKLCKRYG
AAVVVMAFDEAGQADTEARKKEICKRSYDILVNEVDFPPEDIIFDPNIFAVATGIEEHNN
YAVDFINACAYIRDELPYALTSGGVSNVSFSFRGNNPVREAIHSVFLLYAIRNGLTMGIV
NAGQLEIYDQIPAELRDAVEDVILNRTPDGTDALLAIADKYKGDGSVKEAETEEWRAWDV
NKRLEHALVKGITTHIVEDTEESRLSFARPIEVIEGPLMSGMNIVGDLFGAGKMFLPQVV
KSARVMKQAVAHLIPFIELEKGDKPEAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDIV
DLGVMVPAEKILQVAKEQKCDIIGLSGLITPSLDEMVHVAREMQRQDFHLPLMIGGATTS
KAHTAVKIEPKYSNDAVVYVTDASRAVGVATQLLSKELKAGFVERTREEYIEVRERTANR
SARTERLSYPAAIAKKPQFDWSSYEPVKPTFTGAKVLDNIDLKVLAEYIDWTPFFISWDL
AGKFPRILQDEVVGEAATALYADAQEMLAKLIDEKLISARAVFGFWPANQVHDDDLEVYG
DDGKPLARLHHLRQQIIKTDGKPNFSLADFVAPKESGITDYVGGFITTAGIGAEEVAKAY
QDAGDDYNSIMVKALADRLAEACAEWLHQQVRKNYWGYAKDETLDNEALIKEQYTGIRPA
PGYPACPDHTEKGTLFALLDPEASEMHAGRSGVFLTEHYAMFPAAAVSGWYFAHPQAQYF
AVGKIDKDQVQSYTARKGQELSVSERWLAPNLGYDN