PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_24000 FitnessBrowser__pseudo3_N2E3:AO353_24000 (391 amino acids)

SeqID: AO353_24000 FitnessBrowser__pseudo3_N2E3:AO353_24000
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_24000 FitnessBrowser__pseudo3_N2E3:AO353_24000
MRSGTLRANDTDEVQAIDEKESFSFTSGDRELTVAGMLQRIETPAIGGENANSLFQKTVM
QALDRARKAGQSNPIIVGAIPFDPAEASCLYIPEHAEWRTRSATVQTDVAALPELIEQKN
IPDEQGFKRAVEHAIVNFRHSDVRKAVLSVQRELVFAQDVDVGAMQNNLRAQNQSGYHFR
VPMPDGATLIGVSPELLVHKDGLNFVSNPLAGSAKRMSDPQADRRNADWLSASEKDHYEH
RLVTEDIATQLGELCTQLDVPQRPSLISTPALWHLSTRIEGTLADPTVSALQLACRLHPT
PAVCGFPTERARRLIRFVEPFERGLFTGMVGWCDAQGNGEWVVTIRCGTVKRNRVRLFAG
AGIVEASSPDSEWTEVQTKLGTMLRACGLAH