PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_25240 FitnessBrowser__pseudo3_N2E3:AO353_25240 (212 amino acids)

SeqID: AO353_25240 FitnessBrowser__pseudo3_N2E3:AO353_25240
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 115227: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_25240 FitnessBrowser__pseudo3_N2E3:AO353_25240
MKRMTTLLCAVQVCLATMANAAPLSITLPPETAVLKPNALPGYPLAQQKCSTCHSADYIN
FQPPGMSLAQWTGEASKMQHVYGAPISDQDVSIIGAYLAVTYGSAHASDADVQAASNPSA
GQTPAAPLAKVDAMALLQSNSCLSCHATDHKVVGPAYHDVAAKYANDPQALAKVTSSIQQ
GGTGKWGNIPMPPFTQLSPDDLHTLATFVLRQ