PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_26930 FitnessBrowser__pseudo3_N2E3:AO353_26930 (316 amino acids)

SeqID: AO353_26930 FitnessBrowser__pseudo3_N2E3:AO353_26930
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_26930 FitnessBrowser__pseudo3_N2E3:AO353_26930
MKSLVQSGSRDSDVPVYLKLATVTMIWGGTFVAGRFLADSLSPLFAASLRFLLASLALLL
FMVLARIPLARPTFRQWLQLGVLGFFGIFFYNVCFFYGLHYINASRASLIVALNPAVIGL
ASWLLFKERLSRTKIAGIAICIAGAGVVIFSRNQPVFDGGAANSWIGDLLIFGCVLGWGI
YSLFSKGLNQALGPLHTVTYSIVLGTLMLCTTSAVRGEVSLEVLDDLQVTQLLSLLYLGV
LGSALAYIWYYDGIRRIGATRSGVFIALNPLTAVILGALLLGEQLSGAMYLGGAAILLGI
YLCNKPLAPASKRGIL