PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_27065 AO353_27065 cytochrome C oxidase Cbb3 (415 amino acids)

SeqID: AO353_27065 AO353_27065 cytochrome C oxidase Cbb3
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2493995: Diheme cytochrome c-type]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.96
    CytoplasmicMembrane    4.96
    Extracellular          0.07
    OuterMembrane          0.01
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_27065 AO353_27065 cytochrome C oxidase Cbb3
MKRLLSSLGTAVGLAVSLMAIQQAQAADQQQIKRGEYLARAADCMACHTAPGGAPYAGGL
PIVSPFGTIYGTNITPDKDHGIGQYSDDEFFAALTEGKRRDGANLYPAMPYTSYHLMPRE
DSDAIHAYLQTVAPINRAAPVTRLSFPFNVRLGLMGWNMLYGKDVKLTPAEGKSEDWKRG
QYLVDVLGHCGECHTPRGLPGAMQQDKRLTGGLLNGYLAPSLLANDLAARGWTHQDLSSF
LKHGMSAQGTMFNEMFPVFHNSTQNLNEPDLASMATFLLGDPPPQARVLSEVPLDKMTES
ARRGRQDYLNVCAGCHGVNGEGKPHIAVAMQGNTTLRLEDPRNLLRVIEDGIGEQKFAGF
ERMQPMPGFADKLSNQQMTDLISYLRQAWGGQPADLLIGQIEQLKADAPVEHKAH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory