PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_28150 FitnessBrowser__pseudo3_N2E3:AO353_28150 (667 amino acids)

SeqID: AO353_28150 FitnessBrowser__pseudo3_N2E3:AO353_28150
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 123174: Histidine transport ATP-binding protein hisP]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_28150 FitnessBrowser__pseudo3_N2E3:AO353_28150
MRFSPFVERISGQGVAAWDIHNAAFDAQRRGEDVIILSVGDPDFPTPDFITDAAVDALRE
GDTHYTEIAGRLALREAIAARYSQLFGRELQASNVINVAGAQNALFITSLCLLTAGDEVL
ALDPMYVTYEATLKASGATLVRVPCAADSGFRLDAAVLAKAITPRTRAIFLSNPNNPTGV
VLNREELQAIADLAITHDLWVVVDEVYESLAFEREHLSLAALPGMAERCVVIGSLSKSHA
MTGWRIGWIVADETLVAHAETLMLSMLYGLPGFVMEAALKAVQAHEEVTHGMREIYRRRR
DLVVKGLSDCPGISVLTPDAGMFVLVDVRGTGLSSLEFAWRLLREARVSVLDAAAFGEPA
QGFVRLSFTLGEERLAQACQRIRDFIQVLKGEAPRPAITRVTSQATIEPVAAKTMIEVDG
LHKRFGNIEVLKGVSLTAREGDVISLIGASGSGKSTLLRCINMLEVPDQGRILVDGESIQ
LNFDRPGAPLVSDAKQLVRIRSSLGMVFQNFNLWPHRTVLENLIEAPTQVLRESRAEATE
RAEALLERVGLAAKRNEYPAFLSGGQQQRVAIARALAMRPKVMLFDEPTSALDPELVGEV
LRVIRSLAEEGRTMILVTHEMAFARDVSSKVAYLHQGLIEEAGSPDEVFVHPRSERCRQF
VNAHQTR