PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_28165 FitnessBrowser__pseudo3_N2E3:AO353_28165 (259 amino acids)

SeqID: AO353_28165 FitnessBrowser__pseudo3_N2E3:AO353_28165
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15598119: periplasmic histidine-binding protein HisJ[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    Cytoplasmic            0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_28165 FitnessBrowser__pseudo3_N2E3:AO353_28165
MQLRTLQYTVMLFGLIITPLSQAQQVIKFGVDPSYPPFEQKQPDGSLSGFDIDLGNALCA
ELSVKCIWVEQNFDGMVPALKAKKFDAILSAFSATEARRQQVDFSHKIYTAPSSLVARKN
AGLLPTAASLKGKSVGVVQGSLQESFAKSEWGSQGVEILSYQTQDQVFSDLINGRLEAAF
QASVQADIGLLQKPQGQGFAFAGDPITDKRIIGDGVAIGVRKNEPDLREQLNTAIAGIRQ
SGQYDRIAKQYFNFDIYGE