PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_00425 AO356_00425 acetoacetyl-CoA synthetase (651 amino acids)

SeqID: AO356_00425 AO356_00425 acetoacetyl-CoA synthetase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_00425 AO356_00425 acetoacetyl-CoA synthetase
MSDLLWQPSPERIAQSRMNAFRRFVNARHHLQLNDYPTLHAWSIDQREAFWQAIVDFFEI
RFHHAPDAVLVEGAQMPSAQWFPGATLNFAEHLLRRRDDAVAVVALGENGGQEQLTWAEL
AAHVAGLQKSLQAAGVTRGDRVAACMPNTWQTLVGMLASTSLGAIWSCSSPDFGTQGVID
RFGQIEPKVLITCAGYRYAGKVIDQRAKVNEILERLPSLQQLIVLPYAQPDARLEDFKTP
AAIALWNDFYQRGGEPAFVSVPFDHPLYILYSSGTTGVPKCIVHGTGGVLLQHVKEHGLH
VDLGPEDRLFYYTTCGWMMWNWLVSALAVGSAVVLYDGSPFHPGPERLLDLIDQQRISVF
GTSPKFLAALESEGLKPRQTHRLDSLKTLLSTGSALAPHSYDYVYRDVKPDVCLASMSGG
TDIVSCFVNGNPLSPVRRGEMQGKSLGMAVQVWNEAGNPVIGEKGELVCTRHFPAMPIGL
WNDPRQEKLRASYFAQFPGVWAQGDYAEELPHGGLLIHGRSDAVLNPGGVRIGTAEIYRQ
VEKVEQVLDSIAIGQQWQGDVRVVLFVRLRDGVTLDQALEQRIRQVIRTHTTPRHVPAKI
LAVSDIPRTISGKVVELAVRNVVHGEVVKNTDALANPEALEQFRDRPELAS