PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_01010 FitnessBrowser__pseudo5_N2C3_1:AO356_01010 (566 amino acids)

SeqID: AO356_01010 FitnessBrowser__pseudo5_N2C3_1:AO356_01010
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 46577241: Glutaminyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_01010 FitnessBrowser__pseudo5_N2C3_1:AO356_01010
MSKPTVDPTSNSKTGPAVPVNFLRPIIQADLDSGKHTQIVTRFPPEPNGYLHIGHAKSIC
VNFGLAQEFGGVTHLRFDDTNPAKEDQEYIDAIESDVKWLGFEWSGEVRYASQYFDQLHD
WAVELIKSGNAYVCDLTPEQAKEYRGSLIEPGKNSPFRERSVEENLDLFARMRAGEFPDG
ARVLRAKIDMASPNMNLRDPIMYRIRHAHHHQTGDKWCIYPNYDFTHGQSDAIEGITHSI
CTLEFESHRPLYEWFLEHLPVPATPRQYEFSRLNLNYTITSKRKLKQLVDEKHVNGWDDP
RMSTLSGFRRRGYTPASIRNFCEMIGTNRSDGVVDFGMLEFSIRQDLDANAPRAMCVLRP
LKVVITNYPQDQVENLELPRHPQKEELGVRKLPFAREIYIDRDDFMEEPPKGYKRLEPNG
EVRLRGSYVIRADEAIKDADGNIVELRCSYDPDTLGKNPEGRKVKGVIHWVPAAASVECE
VRLYDRLFRSPNPEKAEDSASFLDNINPDSLQVLTGCRAEPSLGNAQPEDRFQFEREGYF
VADIKDSKPGQPVFNRTVTLRDSWGQ