PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_01250 FitnessBrowser__pseudo5_N2C3_1:AO356_01250 (1114 amino acids)

SeqID: AO356_01250 FitnessBrowser__pseudo5_N2C3_1:AO356_01250
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 17367880: "Oligo-1,6-glucosidase"]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_01250 FitnessBrowser__pseudo5_N2C3_1:AO356_01250
MAKKPRSATFIKDPLWYKDAVIYQVHVKSYFDSNNDGIGDFPGLIEKLDYIADLGVNTIW
LLPFYPSPRRDDGYDIAEYRGISPDYGTMADARRFIAEAHKRNLRVITELVINHTSDQHP
WFQRARKAKPGSKARDFYVWSDDDHKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQ
PDLNFDNPQVIKAVLSVMRYWLDMGIDGLRLDAIPYLIERDGTNNENLPETHDVLKLIRA
EIDANYPDRMLLAEANQWPEDTQLYFGDVDAQGMNGDECHMAFHFPLMPRMYMALAQEDR
FPITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDKERDYLWNYYAADRRARINLGIRR
RLAPLMERDRRRVELLNSLLLSMPGTPTLYYGDEIGMGDNIYLGDRDGVRTPMQWSIDRN
GGFSRADPASLVLPPIMDPQYGYQSVNVETQAGDPHSLLNWTRRMLAVRKQSKAFGRGTL
KMLSPSNRRILAYTREYTGPDGKHEIILCVANVSRSAQAAELDLSVYAGMVPVEMLGGNA
FPPIGQLNFLLTLAPYGFYWFVLAAENQMPSWHVEPAQSLPDFTTLVLKKRLEELLEAPS
RTTLEQTILPNWLQNRRWFAGKDSAIEKVDIVYGVRFGDPQRPVLLSEIDVTSGGQTLRY
QLPFGLLAEDQVGAALPQQLALSRVRRGRQVGLITDAFSLESFVRAVLHSMQTATVLPLA
EGELRFEPTEGLAALNLGDEPEVRYLSAEQSNSSVVVGASLVLKLIRKVASGVHPELEMS
AYLTAAGFSNISPLLGSVVRRDADGEDALLMIAQGYLSNQGDAWEWTQNNLERALRDELA
DAVSEQEQHYNALGELKDFAGMLGQRLGEMHQVLAQATDDPDFAPQATNAKEAQAIGKDV
AGQVENALRLLKQSQGQLNPADQAMVARLLEHKKTVLAHVQALAGKAVGGLRIRVHGDLH
LGQVLVIKGDAYLIDFEGEPARPLHERRGKHSPYKDVSGVLRSFDYAAAMAIHLNTVDST
ADADAARQRVAERYLKEARQAFVEAYRLAAASLAHEWKDAEGEDAALALFGLEKAAYEVA
YEAENRPTWLPVPLHGLVGLLSGLQPFSDLAGPI