PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_02385 FitnessBrowser__pseudo5_N2C3_1:AO356_02385 (913 amino acids)

SeqID: AO356_02385 FitnessBrowser__pseudo5_N2C3_1:AO356_02385
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_02385 FitnessBrowser__pseudo5_N2C3_1:AO356_02385
MPSLDSLKTLKTLQVDARTYHYFSLPDAARSLGDLDKLPMSLKVLLENLLRWEDEKTVTG
ADLKALAGWLKERRSDREIQYRPARVLMQDFTGVPAVVDLAAMRAAVEKAGGDPQRINPL
SPVDLVIDHSVMVDKFASSQAFEQNVDIEMQRNGERYAFLRWGQSAFDNFSVVPPGTGIC
HQVNLEYLGRTVWTKEEDGRTYAFPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ
PVSMLIPEVIGFKLIGKLREGITATDLVLTVTQMLRKKGVVGKFVEFYGDGLADLPLADR
ATIANMAPEYGATCGFFPVDEVTLDYLRLSGRPAETVKLVEAYCKAQGLWRLPGQEPVFT
DTLELDMGSVEASLAGPKRPQDRVSLPNVGQAFSDFLGLQVKPTSKEEGRLESEGGGGVA
VGNADQVGEAEYEFEGHTHRLKNGAVVIAAITSCTNTSNPSVMMAAGLLAKKAVEKGLVR
KPWVKSSLAPGSKVVTDYYNAAGLTEYLDKLGFDLVGYGCTTCIGNSGPLPDPIEKAIQK
ADLTVASVLSGNRNFEGRVHPLVKTNWLASPPLVVAYALAGTVRIDISSEPLGNDRDGKP
VYLRDIWPSSQEVAAAVAQVNTSMFHKEYAAVFAGDEQWQAIEVPQAATYVWQDDSTYIQ
HPPFFDDIGGPPPAVRNVEGARVLALLGDSVTTDHISPAGNIKADSPAGRYLREQGVEPR
DFNSYGSRRGNHQVMMRGTFANIRIRNEMLDGEEGGNTIYIPSGERMPIYDAAMLYQATD
TPLVVIAGQEYGTGSSRDWAAKGTNLLGVKAVIAESFERIHRSNLVGMGVLPLQFKLDQN
RKSLNLTGRETLDILGLNDVELTPRMNLPLVITREDGRQERIEVLCRIDTLNEVEYFKAG
GILHYVLRQLIAG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory