PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_05105 FitnessBrowser__pseudo5_N2C3_1:AO356_05105 (562 amino acids)

SeqID: AO356_05105 FitnessBrowser__pseudo5_N2C3_1:AO356_05105
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_05105 FitnessBrowser__pseudo5_N2C3_1:AO356_05105
MQPDFWNDKRPAGVPLDVDLGTYKSVIEVFERSCKKFADRPAFSNMGVTLTYAELERYSA
AFAGYLQTHTDLAPGDRIAVQMPNILQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKD
SGARALVYLNMFGQKVQEVLPDTDLQYLIEAKMGDLMPTAKGWLVNTMVSKVKKMVPAYS
LPQAISFKSALRLGRGQGIKPLNVSLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMQQAR
ACLGQLGEDGQPLLREGQEVMIAPLPLYHIYAFTANCMCMMVTGNHNVLITNPRDIGGFI
KELKNWRFSLLLGLNTLFVALMDHPDFKTLDFSHLKVTNSGGTALIKATAERWQQLTGCG
ITEGYGLTETSPVASANPYGGKSRLGTVGMPVPGTLMKVINDDGLEQPLGERGELCIKGP
QIMKGYWNKPEATAEVLDSEGWFKSGDIAVIDPDGFVRIVDRKKDMIIVSGFNVYPNEIE
DVVMAHPKVANCAVIGVPDERSGEAVKLFVVAREAGVSLEELKAYCKENFTGYKIPKHIV
LRDSLPMTPVGKILRRELRDIA