PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_05195 AO356_05195 sugar ABC transporter substrate-binding protein (433 amino acids)

SeqID: AO356_05195 AO356_05195 sugar ABC transporter substrate-binding protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15598386: probable binding protein component of ABC sugar transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_05195 AO356_05195 sugar ABC transporter substrate-binding protein
MNAISRLATVISLASLLPVAAFPVTTLAAESKGSVEVVHWWTSGGEKAAVDVLKAQVEKD
GFTWKDGAVAGGGGSTAMTVLKSRAVAGNPPGVAQIKGPDIQEWASTGLLDTDILKDVAK
AEKWDSLLDKKVSDTVKYDGDYVAVPVNIHRVNWLWINPEVFKKAGITKNPTTLEEFYAA
GDKLKAAGFIPLAHGGQPWQDSTVFEAVVLSVMGADGYKKALVDLDNKALTGPEMVKALT
ELKKVATYMDADGKGQDWNLEAAKVINGKAGMQIMGDWAKSEWTAAKKVAGKDYECVAFP
GTDKAFTYNIDSLAVFKQKDAGTAAGQQDIAKVVLGENFQKVFSINKGSIPVRNDMLGDM
AKYGFDSCAQTAAKDFLTDAKSGGLQPSMAHNMATTLAVQGAFFDVVTNYINDPKADPAD
AAKKLGAAVQSAK