PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_07075 FitnessBrowser__pseudo5_N2C3_1:AO356_07075 (458 amino acids)

SeqID: AO356_07075 FitnessBrowser__pseudo5_N2C3_1:AO356_07075
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 7404369: Fumarate hydratase class II]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_07075 FitnessBrowser__pseudo5_N2C3_1:AO356_07075
MSNTRIERDSMGELQVPVDALYGAQTQRAVDNFPVSGQRMPAQFIRALILAKAAAARANV
ELEQISAAQGKAIVDAALGLLEGRFMDHFPVDIFQTGSGTSSNMNANEVIATLASGLLGE
AINPNDHVNCGQSSNDIIPTSIHVSAALALHEQLLPALLHLVQVIERKAEEVHPFIKTGR
THLMDAMPVRLSQVLDGWAQQLKANIGHLQDLLPSLQSLAQGGTAVGTGVNAHPRFAELF
SQQLTQLTQVQFTPGKNLFALIGSQDTAVAVSGQLKTTAVSLMKIANDLRWMNSGPLAGL
GEIELEGLQPGSSIMPGKVNPVIPEATAMVAAQVIGNDTVITIAGQSGNFELNVMLPIIA
QNLLSSIALMSTASRLLADKAIATFKVNEARLKEALSRNPILVTALNPIIGYQKAAEIAK
KAYQQGRPVIDVALEHTDLSRSELEVLLDPEKLTAGGV