PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_07325 AO356_07325 PTS fructose transporter subunit IIBC (580 amino acids)

SeqID: AO356_07325 AO356_07325 PTS fructose transporter subunit IIBC
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 131490: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_07325 AO356_07325 PTS fructose transporter subunit IIBC
MKLAIVTACPNGMVTSVLCARLLDAAAQRQGWSTSVEVHDAAHPERQLSAATLEAAEWVL
LVASGPVDLSRFVGKRVFRSTPALALQDVDAVLRRGAVEAEVLGEADASAQVPAASAERA
PRLVAITACPTGVAHTFMAAEALQQAATKLGYDLQVETQGSVGARNPLSAEAIAEADVVL
LATDIEVATERFAGKKIYRCGTGIALKQAEATLNKALVEARQESASSGASAPAKSEKTGA
YKHLLTGVSFMLPMVVAGGLMIALSFVFGIEAFKEPGTLAAALMQIGGETAFKLMVPLLA
GYIAYSIADRPGLAPGMIGGMLASTLGAGFIGGIIAGFLAGYAAKAISRYARLPQSLEAL
KPILIIPLLASLFTGLVMIYIVGKPVAGMLEALTHFLDSMGTTNAILLGVLLGAMMCVDL
GGPINKAAYAFSVGLLASQSYAPMAAAMAAGMVPPIGLGIATFIARRKFAQTEREAGKAA
LVLGLCFISEGAIPFAAKDPLRVIPASIAGGALTGALSMYFGCKLMAPHGGLFVMLIPNA
INHALLYLLAIVAGSLLTAVAYALLKRPEVVEMALEPAKA