PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_07720 FitnessBrowser__pseudo5_N2C3_1:AO356_07720 (323 amino acids)

SeqID: AO356_07720 FitnessBrowser__pseudo5_N2C3_1:AO356_07720
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 20141681: Cytoplasmic membrane associated cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.59
    Cytoplasmic            0.41
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane (This protein may have multiple localization sites.) 9.59

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_07720 FitnessBrowser__pseudo5_N2C3_1:AO356_07720
MTLLHVKDLQVRFAAPGSGPFGINRQWVKAVNGVSLSLAAGEVLGLVGESGSGKSTLGRA
ILRLTEVSAGQILFDGVDMAQGKRIDIERLRHETAMIFQDPYTALNPRMSIGDTLAEVLR
VRCAIPASLIRQRVDELLNLVGLRPELAHRKPGSLSGGQCQRVGIARALAIEPRLIIADE
CVAALDVSIQGQIINLLLELRQRMNLAILFIAHDLAIVRRLCDRVAVMYLGEIVEQGPTE
TVFSSPRHPYTVALIQSIPHIDPTRPLLSAPLPGEPPSPLNLPSGCVFHPRCRYAQPICA
KTPPPSHDINGHRYSCVLGEPLL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory