PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_07790 AO356_07790 permease DsdX (449 amino acids)

SeqID: AO356_07790 AO356_07790 permease DsdX
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 54041238: High-affinity gluconate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_07790 AO356_07790 permease DsdX
MAPAFGYWLLVYAAIAIIALIVLIARYRLNPFIVITLVSIGLALLAGMPPSSVVGAYEAG
VGKTLGHIALVVALGTMLGKMMAESGGAERMAQTLIERFGERNAHWAMVCIAFLVGLPLF
FEVGFVLLVPIAFTIARRVGVSILMVGLPMVAGLSVVHALVPPHPAAMLAVQAFQASVGQ
TLLYAILIGIPTAIIAGPLYAKFIVPRIQLPAENPLERQFLDREPRARLPGFGVTLGTIL
LPVILMLIGGWANLISTPGSGFNQFLLFIGNSVIALLLATVLSFWTLGLAQGFNRESILK
FTNECLAPTASITLLVGAGGGLNRILVDAGVTQQIVGLAQEFQLSPLVMGWLFAALMRVA
TGSATVAMTTASGIVAPVAIGLGYPHPELLVLATGAGSVIFSHVNDGGFWLIKEYFNMTV
TQTFKTWTVLETLISVVAFALTLGLSRLL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory