PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_11320 FitnessBrowser__pseudo5_N2C3_1:AO356_11320 (522 amino acids)

SeqID: AO356_11320 FitnessBrowser__pseudo5_N2C3_1:AO356_11320
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027906: Putative sulfate transporter ychM]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_11320 FitnessBrowser__pseudo5_N2C3_1:AO356_11320
MAIPTRHSLFPFLSWLPRQTRQSVGRDLIVGLSGAILALPQSIAYALIAGLPPEYGLYAA
IVPVLIACLWGSSWHLICGPTAAISIVLYATVSPLAVPASQDYITLILLLTVLAGIFQWL
LGLLRFGALVNFVSHSVVLGFTLGAAVVIALGQLPNLLGLDLPNEATALKGLLMLVSHIE
AVDKPSLLLGLGTLLLGVVLKRLLPRWPSLLITLIISSLVVWLWPAMFGHVALVSAFAGR
LPPLTLLPLDLELILRLLPGAVAVGMLGLVTSLSIARSLSVRSGQLLDANQEVRAQGLSN
LVGGFFSGSLSAGSFTRSGLSYEAGACSPLAGVFSALWVALFAVAGAKLIAHIPIPAMAG
SILLIAWGLVDHRGIRALYRVSRAEFMVMSLTCLATLLLELQTAIYAGVLASLFFYLKRT
SQPRVQHFREGEAEILRVGGSIFFGASHYLQVRLQRLQAQRVVIDAQQINFIDYSGVEML
HQEARRLRGQGRSLTLRKARPQVVEELLKLEGPEHCPIHFED

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory