PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_12080 FitnessBrowser__pseudo5_N2C3_1:AO356_12080 (366 amino acids)

SeqID: AO356_12080 FitnessBrowser__pseudo5_N2C3_1:AO356_12080
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15596607: probable periplasmic spermidine/putrescine-binding protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_12080 FitnessBrowser__pseudo5_N2C3_1:AO356_12080
MNRLKRFMAPAVCAALLCGAVQAEERTLRVYNWFDYITPKALEDFKAQNSQVKLVYDIFD
TNEALEAKLLTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWNHLDPKLMKLIEAN
DPGNKFAVPYMYGTILIGFNPDKIKAALGDNAPVDSWDLIFKEENISKLKQCGVALLDSP
SEILPLALQHLGLDPNSKKPADYAKAEALMMKIRPHITYFHSSKYMADIANGDICVAVGY
SGSFSQAANRAKEAKNGVTVDMRLPKEGAPIWFDMLAIPKGAANPGDAYTFINYLLQPQV
IAPVSDFVGYPNPNKDATEMVDPAIRNNPNLYPTEAAMTTLYTLQPLPRDAERARTRAWT
RIKSGQ