PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_13155 FitnessBrowser__pseudo5_N2C3_1:AO356_13155 (365 amino acids)

SeqID: AO356_13155 FitnessBrowser__pseudo5_N2C3_1:AO356_13155
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2507606: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_13155 FitnessBrowser__pseudo5_N2C3_1:AO356_13155
MKIAGKTLLAMSLMGVMAGAVQADDKVLHVYNWSDYIAPDTVAKFEKETGIKVVYDVFDS
NETLEAKLLAGKSGYDIVVPSNNFLAKQIKAGVYQELDKSKLPNWKNLDTDLLKAVGDAS
DQGNKHAFPYMWGTIGIGYNPEKVKAALGVDKIDSWDTLLKPENIAKLKSCGVSFLDSPT
EMIPVALHYLGYPTDSQDKKQLAEAEALFLKLRPSIGYFHSSKYISDLANGNICVAVGYS
GDIEQSKSRAAEAGGKVKVAYTIPKEGAGSFYDMVAIPKDAENVEAAYKWMNFIMQPEIM
AQITDNVRFPNGNKAATALVDKEISGDPSIYPSDEVKAKLYAISDLPPATQRILTRSWTK
IKSGK