PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_15155 FitnessBrowser__pseudo5_N2C3_1:AO356_15155 (424 amino acids)

SeqID: AO356_15155 FitnessBrowser__pseudo5_N2C3_1:AO356_15155
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Extracellular                 [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Extracellular                 [matched 3914947: Extracellular protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Extracellular          10.00
    Periplasmic            0.00
    OuterMembrane          0.00
    CytoplasmicMembrane    0.00
    Cytoplasmic            0.00
  Final Prediction:
    Extracellular          10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_15155 FitnessBrowser__pseudo5_N2C3_1:AO356_15155
MKTTTEKFGVTPHQPSLWTRADALKVRADDPTTTQPLVSADFPVLNNDVFIWDTMPLRDL
DGNVTSVDGWSVIFTLTADRHPNDPQYLDEDGNYDILRDWNDRHGRAKMYYWFSRTGKNW
EFGGRVMAEGVSPTAREWAGTPILLNDRGEVDLYYTAVTPGATIVKVRGRVVTTEHGVSM
VGFEKVKPLFEADGKMYQTEAQNAFWGFRDPWPFRDPNDGKLYMLFEGNVAGERGSHKVG
EAEIGDVPPGYEDVGNSRYQTACVGIAVARDADGDDWEMLPPLLTAVGVNDQTERPHFVF
QDGKYYLFTISHTFTYGDGVTGPDGVYGFVADSLFGPYVPLNGSGLVLGNPSSQPFQTYS
HYVMPNGLVTSFIDSVPTDETGTQIRVGGTEAPTVGMKIKGQQTFVVAEYDYGYIPPMLD
VTLK