PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_16680 AO356_16680 phosphate acetyltransferase (699 amino acids)

SeqID: AO356_16680 AO356_16680 phosphate acetyltransferase
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596032: phosphate acetyltransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            7.33
    CytoplasmicMembrane    2.64
    Periplasmic            0.03
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_16680 AO356_16680 phosphate acetyltransferase
MQTFFIAPTDFGVGLTSISLGLVRTLERAGLKVGFFKPIAQPHPGDTGPERSTELVARTH
GLKPPQPLGLAHVERMLGDGQLDELLEEIITLYQQAAIGKDVLVVEGMVPTRNASYAARV
NLHLAKSLDAEVILVSAPENEVLTELSGRVELQAQLFGGPKDPKVLGVILNKVRTEESME
AFSARLKEHSPLLRSGDFRLLGCIPFRPELNAPRTRDVADLMGAQVLNAGDYETRRMSNI
IICARTMRNTVELLKPGVLVVTPGDRDDIILAVSLAAINGVPLAGLLLTSDTLPDPRIMD
LCRGALQAGLPVLSVSTGSYDTANLLNGLNKEIPIDDRERAEIITDFVASHLDAKWLHQR
CGTPREMRLSPAVFRYQLIQRAQAANKRIVLPEGSEPLTVQAAAICQARGIARCVLLAKP
ADVEAVARAQGIELPPGLEILDPDSIRERYVEPMVRLRKSKSLNAPMAEQQLEDTVVIGT
MMLALDEVDGLVSGVIHSTANTIRPALQLIKTAPGCSLVSSVFFMLFPEEVLVYGDCVMN
PHPSAAELAEIALQSADSAAAFGITPRVAMLSYSSGESASGEEVEKVREATLLAHEAQQG
LLIDGPLQYDAAANETVARQLAPNSQVAGRATVFIFPDLNTGNTTHKAVQRSADCVSLGP
MLQGLRKPVNDLPRGAQVDDIVYTIALTAIQAANRPLDI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory