PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_17010 FitnessBrowser__pseudo5_N2C3_1:AO356_17010 (391 amino acids)

SeqID: AO356_17010 FitnessBrowser__pseudo5_N2C3_1:AO356_17010
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_17010 FitnessBrowser__pseudo5_N2C3_1:AO356_17010
MTAACLMTTYQPLALNFTHGLGTRLWDQDGREYLDAVAGVAVTNVGHSHPRLVAAISEQA
GLLLHTSNLYSIDWQQRLAQKLTQLSGMERAFFNNSGAEANETALKLARLYGWHKGIEQP
LVVVMDNAFHGRTLGTMSASDGPSVRLGYNRLPGDFIKVPFGDLAALEQIQQAHAERIVA
VLVEPIQGESGVQLAPPGYLKALRQLCSRRAWLLMLDEIQTGIGRTGQWFAFQHEGIVPD
VMTLAKGLGNGVPIGACLARGKAAELFTPGSHGSTFGGNPLACRVGCTVLDIIEEQALVG
NARHQGEQLLSRLRTELAENPNVLAIRGQGLMIGIELKQPVRDLTLRAARDHGLLINVTR
GQTIRLLPPLTIDGREVEMIVRGVSRCLAQG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory