PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_17385 AO356_17385 amino acid ABC transporter permease (393 amino acids)

SeqID: AO356_17385 AO356_17385 amino acid ABC transporter permease
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84028710: Glutamate/aspartate transport system permease protein gltJ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_17385 AO356_17385 amino acid ABC transporter permease
MQNSIGAPKQRLSLSDPRVRAWVFQIVTIVAVISLGWFLFDNTQTNLAHRGITSGFGFLE
RSAGFGIAQHLIDYTEADSYARVFVIGLLNTLLVTFIGVILATILGFIVGVARLSQNWII
AKLATVYVEVFRNIPPLLQILFWYFAVFLSMPGPRAAHNFGDTFFVSSRGLNMPAALVAE
GFWPFVISIVLAIVAIVLMARWANKRFEATGEPFHKFWVGLALFLVIPALSALLFGAPVH
WEMPELKGFNFVGGWVLIPELLALTLALTVYTAAFIAEIVRSGIKSVSHGQTEAARSLGL
RNGPTLRKVIIPQALRVIIPPLTSQYLNLAKNSSLAAGIGYPEMVSLFAGTVLNQTGQAI
EVIAITMSVYLAISISISLLMNWYNKRIALIER

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory