PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_17740 FitnessBrowser__pseudo5_N2C3_1:AO356_17740 (770 amino acids)

SeqID: AO356_17740 FitnessBrowser__pseudo5_N2C3_1:AO356_17740
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_17740 FitnessBrowser__pseudo5_N2C3_1:AO356_17740
MALAHTLGFPRIGADRELKKALEAYWKGDLAPAALQAVGRELRARHWQLQKDAGIDLLPV
GDFAWYDQVLSHTLTLGAVPQRFHGTLNAQGRPTLDTLFAMARGATASCCGAEHGQAQYA
QELTKWFDTNYHYLVPEFSADQTFALSWEQLFDEVDEAHALGHQVKPVIIGPLTYLWLGK
AKGEAFDKLGLLERLLPVYGEILNRLKAQGVEWVQIDEPILTLDLPLAWRSAFERAYHIL
QYSPLKKLVATYFSGLQDNLGLAVSLPVDGLHIDAVRDPEQLGQVLDRLPTYKILSVGLV
NGRNVWRCELEQALAQLQAAQERFGDNLWVSTSCSLLHSPVDLEREDRLDPELKSWLAFA
VQKCGEVAVLRDALNDPQAPAVLQALSDSREVQARRAGSARIHKAEVQARLAAIGPQDSQ
RHSPFAQRIERQRARLALPAFPTTTIGSFPQTPAIRLARQAYKQGKLSANDYQDAMHTEI
RHAVQIQERLGLDVLVHGEAERNDMVEYFAEQLDGYAFTRFGWVQSYGSRCVKPAIIYGD
ISRPKAMTVDWIRYAQSLTDKVMKGMLTGPVTMLMWSFPREDVSRQVQARQLALALRDEV
LDLEKAGIRIVQIDEAAFREGLPLRRGQWQHYLDWAVEAFRLCASGVGDDTQIHTHMCYS
EFNDVIKAIADMDADVITIETSRSDMELLEAFEAFDYPNDIGPGVYDIHSPRVPDTAEMV
ALMSKAVKRIAAERLWINPDCGLKTRGWPETEAALVNMVAAARQLRSELA