PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_20285 FitnessBrowser__pseudo5_N2C3_1:AO356_20285 (206 amino acids)

SeqID: AO356_20285 FitnessBrowser__pseudo5_N2C3_1:AO356_20285
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1703252: KHG/KDPG aldolase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_20285 FitnessBrowser__pseudo5_N2C3_1:AO356_20285
MLTQALAHNGLIAILRGLRPEEAAAIGEVLYSAGFRVIEVPLNSPEPYESIRILRSTLPA
DCLIGAGTVLTPEQVEQVKAAGGQVIVMPHSDPKVLRAAKAAGLYLSPGVATPTEAFAAL
AEGAHVLKMFPAEQMGPAVVKAWLAVLPAGTVLVPVGGITPDNMAVFVEAGVKGFGLGSG
LFKPGLTADEVAVRAKAYVAAWNALN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory