PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_20660 FitnessBrowser__pseudo5_N2C3_1:AO356_20660 (443 amino acids)

SeqID: AO356_20660 FitnessBrowser__pseudo5_N2C3_1:AO356_20660
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 76363492: D-galactonate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_20660 FitnessBrowser__pseudo5_N2C3_1:AO356_20660
MSNSHTSQIASARDAVVPERLPSRRRWFMLSLLLIATIINYIDRVNISIAAPFLAKDLGL
DKIEMGLIFSAFAWTYAIALVPAGFIADRFGSRFTYGVSLISWSTVTVCQGFATGFASLF
GLRLAVGAMEAPAFPANSRAVTVWFPARERGLASSIYVCGQYLGTALFTGALLWLATTYD
WRHVFYSTGALGIVFGVAWLFLYRDPMNCKKVSKEELKYIEAGGGLVKSSQERTRFNWRQ
IAELFSYRQVWAICIGKFASTSALYFFLTWFPTYLIEERQLTMIKAGIFAVLPFVGATVG
ILLAGIVSDLLIRRGYSLSFARKLPLVVGSMLGMSIVLVNFTDSNVICIAVLTIAFFAQG
IASSSWAAVSEVAPKELIGLTGGITSLAANIGGIVTPIVIGAIVHKTGSFALAFWFIGGV
ALIGTLSYSLLLGRLYRIELKAR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory