PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_21615 AO356_21615 ABC transporter ATP-binding protein (369 amino acids)

SeqID: AO356_21615 AO356_21615 ABC transporter ATP-binding protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 266444: Lactose transport ATP-binding protein lacK]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_21615 AO356_21615 ABC transporter ATP-binding protein
MAEIRLQNLAHSYTSTPAGPEDYAIREMNHIWEQGGAYALLGPSGCGKSTLLNIISGLLS
PSEGQVMFDSKVVNDLTPEHRNIAQVFQFPVVYDTMTVFDNLAFPLRNQGMAEARIHTKV
QEIAEVLDLQNLLDKKARNLTADEKQKVSMGRGLVRDDVSAILFDEPLTVIDPHLKWKLR
RKLKQIHEQFNITMVYVTHDQLEASTFADKIAVMYGGQIVQFGTPRDLFERPSHTFVGYF
IGSPGMNLIEVTAQPGGVGFASTHLPLSETLQRRVAEAEGKSLKVGIRPEFVHVWDGPYD
DAMQADVVHVEDLGTYKILTLNLDGAPLKVRLAEDKPVPEGTAYISFPAQWLMVYADEYL
LEPLSEVQP