PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_23205 AO356_23205 D-ribose transporter ATP-binding protein (517 amino acids)

SeqID: AO356_23205 AO356_23205 D-ribose transporter ATP-binding protein
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 132119: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_23205 AO356_23205 D-ribose transporter ATP-binding protein
MFASATASSAPAMTFQPDVSLDEPYLLEVVNVSKGFPGVVALSDVQLRVRPGSVLALMGE
NGAGKSTLMKIIAGIYQPDAGELRLRGKPVTFDTPLAALQAGIAMIHQELNLMPHMSIAE
NIWIGREQLNGLHMVDHGEMHRCTARLLERLRIKLDPEEQVGNLSIAERQMVEIAKAVSY
DSDILIMDEPTSAITETEVAHLFSIIADLKSQGKGIIYITHKMNEVFAIADEVAVFRDGA
YIGLQRADSMDGDSLISMMVGRELSQLFPVREQPIGELVLSVRDLSLDGIFKGVSFDLHA
GEILGIAGLMGSGRTNVAEAIFGVTPSTGGEIRLDGQPVRISDPHMAIEKGFALLTEDRK
LSGLFPCLSVLENMEMAVLPHYVGNGFIQQKALRALCEDMCKKLRVKTPSLEQCIDTLSG
GNQQKALLARWLMTNPRILILDEPTRGIDVGAKAEIYRLISYLASEGMAVIMISSELPEV
LGMSDRVMVMHEGDLMGTLDRSEATQERVMQLASGLS