PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_24195 FitnessBrowser__pseudo5_N2C3_1:AO356_24195 (508 amino acids)

SeqID: AO356_24195 FitnessBrowser__pseudo5_N2C3_1:AO356_24195
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_24195 FitnessBrowser__pseudo5_N2C3_1:AO356_24195
MNPPSSLLVLTPGDDVAVARGDIAEGQSVNADGIRLVARQAIPSGHKIALRPVLAGQRVL
KYGQTIGQATQAIEPGDHVHVHNLDMPANTTEHSVRNVYVPTSLSENPATFEGYVREDGR
VGTRNYIGVISSVNCSATVCKQIANTFSAERLKDFPNVDGVVAITHGSGCGMGAQGEGID
ILKRTLRGYADHANFAGVLLIGLGCEVNQLTPLMNELGDRSAALKASLVIQDEGGTREAV
RRGIAHIEAMLPLVDQCQRTTVAASHLCVGLQCGGSDGYSGITANPALGAAVDLLVQQGG
TAILSETPEIYGAEHLLTARAASADIAAKLMARIHWWEAYVRHNDGDMNNNPSPGNKAGG
ITTILEKSLGAVAKAGATGLMGVYQYAETVDARGLVFMDTPGYDPVSATGQVAGGANLIC
FTTGRGSTYGCKPTPSLKIATNTRLFQRMELDMDFNAGGIVDGVESVAQAGERLFRLMLA
TASGHRTCSEENGLGDNEFLPWQIGAVM

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory