PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_24205 FitnessBrowser__pseudo5_N2C3_1:AO356_24205 (541 amino acids)

SeqID: AO356_24205 FitnessBrowser__pseudo5_N2C3_1:AO356_24205
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597612: periplasmic trehalase precursor[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.44
    Cytoplasmic            0.33
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
  Final Prediction:
    Periplasmic            9.44

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_24205 FitnessBrowser__pseudo5_N2C3_1:AO356_24205
MRPIELTSLSFATLLCVACSSQPPATWSYVDAQGRANLPPDQAYPELFEAVQRGQVFTDQ
KHFVDALPNRDPAQIRADYLARRDHDGFDIKAFVKDNFIESGQAESPAPKPGAPIQEHID
SLWPILSRSYSQVPAYSSLLPLPQPYVVPGGRFREMYYWDSYFTMLGLEQSGDKARVRQM
TDNFAYMIDTYGHIPNGNRTYYLSRSQPPFFAYMVALQARIEGDQAYGRYLPQLQKEYAY
WMAGAQALKPGAADRHVVKLADGSVLNRYWDASPTPRQESWLQDVRTAEQAPDRPKEEVW
RDLRAGAESGWDFSSRWLDDGQNLASIRTTAIVPVDLNSLIYHLEQTIAKACETVQNAPC
VQAYGRRAELRQRAIEQHLWNADKGFYVDYDWQRQQQRQQLTAATLFPLYTGLASAEHAH
RTADAVRDGLLRVAGIATTQVNTGQQWDEPNGWAPLQWVAVEGLDRYGHTALAQQVGSRF
LQQVENLYRKENKLVEKYDLSGRGDGGGGGEYELQDGFGWTNGVTLKLLGKYGKTSSTLG
E

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory