PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_24590 FitnessBrowser__pseudo5_N2C3_1:AO356_24590 (440 amino acids)

SeqID: AO356_24590 FitnessBrowser__pseudo5_N2C3_1:AO356_24590
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 4033491: Inner membrane transport protein yfaV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_24590 FitnessBrowser__pseudo5_N2C3_1:AO356_24590
MSQELRLIRRITLKLIPFLILLYLIAYVDRSAVGFAKLHMGADIGIGDAAYGLGAGLFFI
GYFLLEIPSNLMLERFGARRWFARIMITWGAITIGMAFVQGPHSFYVMRFLLGAAEAGFF
PGVLYYITQWFPVRHRGKILGLFILSQPIAMMITGPVSGGLLGMDGILGLHGWQWLFIVI
GLPAVLLTWPVLRYLPDGPQQVKWMDQAEKDWLTGELKKDLQEYGQTRHGNPLHALKDKR
VLLLALFYLPVTLSIYGLGLWLPTLIKQFGGSDLVTGFVSSVPYIFGIVGLLIIPRSSDR
LNDRYGHLAVLYVLGAIGLFLSAWLSVPVLQLAALCLVAFALFSCTAVFWTLPGRFFAGA
SAAAGIALINSVGNLGGYIGPFVIGALKEYTGNLASGLYFLSGVMVFGLVLTGVVYRLLE
RKHVLPADQFAASARGATRT