PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_25515 FitnessBrowser__pseudo5_N2C3_1:AO356_25515 (255 amino acids)

SeqID: AO356_25515 FitnessBrowser__pseudo5_N2C3_1:AO356_25515
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708001: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_25515 FitnessBrowser__pseudo5_N2C3_1:AO356_25515
MSEDLDFSGQTVLVTGGAQGIGRAIVEAFALRGARVVIADLGLARAEAVADELTAVGCQV
QAVGVDLADATAIFEMMSALEQRLGRLDTLVHNAGYFPLTPFAEITPAMLERTLAVNLSA
LFWLTQAALPMFRRQGRGCVLVTSSVTGPRVAYPGLSHYAASKAGVNGFIRNAALELAAE
NVRVNGVEPGMIATPAMANLGDDEVNQDIARRVPLGRLGQPSDIAGAMLFLASSLASYVT
GQTLVVDGGSTLPEV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory