PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_25650 FitnessBrowser__pseudo5_N2C3_1:AO356_25650 (263 amino acids)

SeqID: AO356_25650 FitnessBrowser__pseudo5_N2C3_1:AO356_25650
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 12231027: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_25650 FitnessBrowser__pseudo5_N2C3_1:AO356_25650
MKTITSSMTFCGLLALSCGALAEPAPSLLDQVLQRGELKVCTTGDYKPYTFKTEAGEYEG
IDIDMARSLAASLGVKVQWVQTTWKTLMPDMVAGQCDIGMGGISVTLERQKKAYFSTTLD
VDGKIPLVRCEDKERYQTLEQMNQPSVRLVEPAGGTNEAFVRAFLPNGQLSFHDNVTIFQ
QLLDKKADVMITDASEALYQQKLKPGLCAVNPTRYLQYGEKAYLLPRDDNTWKMYVDQWL
HLSKANGSYQKVIGQWLAVPATQ