PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_26510 FitnessBrowser__pseudo5_N2C3_1:AO356_26510 (631 amino acids)

SeqID: AO356_26510 FitnessBrowser__pseudo5_N2C3_1:AO356_26510
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595249: potential phenazine-modifying enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_26510 FitnessBrowser__pseudo5_N2C3_1:AO356_26510
MCGFVVACHHQAPVPTVTLDAALDTLRHRGPDGRASWLSADGLCGIGFHRLAMVGAREQT
QPFHTDDVHVVVNGEIYQYAAQRQKLEAAGACFATDSDCEVVAHGYLQLGIDYVRELNGE
FAGVIWDARRRKLFAIRDRWGVKPLFYRLSDQGIHLASEIKALIALGAQPRWDHAALFQH
FFASIGPAQTLFEGIHQVPPGHVLEWSTQGYGVTPLLSAVDEAHDAARQHLASAPREWMP
RLVDGLRHAVQDRFQGDGPVACYLSGGVDSATVAALAARHGREGLSAFTVDFGAGTDDAT
QAAGIAASLGLRHEVVPVSEAQLVDHFADAVRHAETIGFNTIGAARWILGRVLASSGYKA
VLAGDGADELFAGYSFSSVERLCARSHNHARLMTQVLEGGRQGLAAELGQPLPLFDMDPD
RFGGQVPYLLASWNYQRSGLRPLLRTQFLEAFRHFNPYEVLMQQTGASAASGLRRSLHLW
QKSMFANHILVSERFDMAHGIETRYPFLDNRVTAVAAMLPDEWLVEGAENKRFLREAVAA
LTPEAARCAAKRPFEAPAVFAQPGDGPFRRYLREVLHDSSVKHSGIFDVQELLRLEARLP
SLSGKMAQRVDSLLTMALSFFVLQQCFAVTE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory