PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_27715 FitnessBrowser__pseudo5_N2C3_1:AO356_27715 (382 amino acids)

SeqID: AO356_27715 FitnessBrowser__pseudo5_N2C3_1:AO356_27715
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_27715 FitnessBrowser__pseudo5_N2C3_1:AO356_27715
MLRKTLLAAFCASAVLTLATPASAAPTQSFKSEEGTLEVTTVVKGLEHPWSVAFLPGQQG
MLVTERGGNLRVVSPDGQLSAPLSGVPEVWAKGQGGLLDVVLSPDFKQDRTVYLSYAEVG
ADGKAGTAVGRGQLAEDLKSLKNFDVVFRQQPKLSTGNHFGSRLVFDRDGYLFITLGENN
DRPTAQDLDKLQGKVVRIYPDGKVPDDNPFVGQKGVRPEIWSYGMRNPQGAALNPWSGTL
WENEHGPRGGDELNIIERGKNYGWPLATHGINYSGAPIPEAQGKTVEGALDPHHVWQVSP
GLSGMAFYDQGRFKAWQHNVFIGALVPGELIRLQLQGDKVVHEERLLGELKARIRDVRQG
PDGYLYVLTDEDDGALYKVGLK