PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_27965 FitnessBrowser__pseudo5_N2C3_1:AO356_27965 (490 amino acids)

SeqID: AO356_27965 FitnessBrowser__pseudo5_N2C3_1:AO356_27965
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595944: probable aldehyde dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_27965 FitnessBrowser__pseudo5_N2C3_1:AO356_27965
MSAPKSHLLSQVIESECVFNGDWVPASGPLQSIIEPATGERLMRCAMADSADIAKASRDA
ALAQPAWAALGPRQRAAIFRKAADVAEQSFDELALYVARETGAALFKGQHEMREAIVLLH
QAAGLLSQAHGVVLPSEAGRLSYARRQPHGVVGVISPFNFPLVLSMRSVAPALAAGNAVV
LKPDPQTPVSGGFLIARLFEVAGLPKGLLQVLPGAADAGEALCRDPNVRMIAFTGSTGAG
RKVAEVAGRNLKKVALELGGKNPLIILEDADLDLAARNAAWGAWLHQGQICMATGLILAH
ESIAAELTRKLVEKAQAMTLGNAAREEAAMGPLINQRQLQRVHDIVSDTVLAGARLEAGG
DHDRLFYQATVLSGVKPGMRAFDEEVFGPVATVVSFATDDEAIELANRTEYGLAAAIISP
SVGRAMAIGERLQCGMLHINDQTVADECVNPFGGRGASGNGGSVGGPADWDEYTQWQWVT
VKDTAPIYPF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory