Running PSORTb v3.0 on AO356_28210 FitnessBrowser__pseudo5_N2C3_1:AO356_28210 (10307 amino acids)
SeqID: AO356_28210 FitnessBrowser__pseudo5_N2C3_1:AO356_28210 Analysis Report: CMSVM- CytoplasmicMembrane [No details] CytoSVM- Unknown [No details] ECSVM- Extracellular [No details] ModHMM- Unknown [No internal helices found] Motif- Extracellular [matched GGXGXD: C-terminal secretion motif - Extracellular] OMPMotif- Unknown [No motifs found] OMSVM- OuterMembrane [No details] PPSVM- Periplasmic [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Cytoplasmic [matched 15597595: pyoverdine synthetase D [Pseudomonas aeruginosa PAO1]] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Extracellular 9.01 Periplasmic 0.99 CytoplasmicMembrane 0.00 OuterMembrane 0.00 Cytoplasmic 0.00 Final Prediction: Extracellular 9.01 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>AO356_28210 FitnessBrowser__pseudo5_N2C3_1:AO356_28210 MQFSELMAALSQHPIRLQQDGDNLVILGDDERMDHALWESLTVHKQELLDLVERNGGDWL SPAFRITPDMLPLADLTQEEIDRIVDTVPGGAGNVQDIYPLAPLQEGILYHHLAAEQGDP YVLQSLFGADRRTRLDDFAQALQGVIDRHDILRTSVVWEGLDEPVQVVWHEATLALEEVV LDPAAGDAVWQLQQRFDTRHHRLDVGQAPLMRLICAQDRDNDRWVAILLFHHMAIDHTAL ELVQGEMQAFLLGQAHQLPDPVPYRNYVAQVRLGVGGDSHEGFFREMLADVDEPTLPLGF AEVPEGQSVIEEAHLPIDASLSRRLRAQARQLGVSAASLHHLAWARVVGGLSGKQDVVFG TVLMGRMQGGDGADRALGMFINTLPLRVKLAGHGAREGVKNTHASLTALLGHEHASLALA QRCSGVAAPAPLFGALLNYRHSSTAQALSSQTLEAWEGLHALGGAEGTNYPLTLSVDDLG EGFSLSVLALAGMGAQRIAGYMRQALENLVWMLEQQPDMPLQRLSILPASEREQLLVTFN ATEADYPRQQTVHGLFEEQVQRTPDAVAVIRGEQRLSYRELNERANRQAHYLRKQGVEPD SRVAICVERSIDMVVGLLAILKAGGGYVPLDPAYPLDRIAYMLEDSAPAAVLTQTATLEL LAAASMPVINLESGDWQDESVQNPEVTELTSSHLAYVIYTSGSTGLPKGVMIEHRNTVNF LTWAHRSFDAQTLSKTLFSTSLNFDLAVYECFAPLTSGGSIEVVTNVLELQQGEHDITLI NTVPSALKALLESGGLGEGVDTVNVAGEALKRSLVETLFEQTQVKRLCNLYGPSETTTYS SWVSMAREDGFAAHIGKPVANTQFYLLDEHKQPVPLGVPGEIYIGGAGVARGYLNRDDLT AERFLKDPFSTAPNARMYRTGDLGRYLPDGNIEYLGRNDDQVKIRGFRIELGEIEAKLSQ HDALKEAVVVAREDVPGDKRLVAYFTQHSPVDIETLRTHLQAQLPAYMVPVAYVRLEALP LTPNGKLDRKALPAPDLDAVITRGYEAPQGETETTLAQIWQDLLKVERVGRHDHFFELGG HSLLAVTLIERMRQAGLSADVRVLFGQPTLAALAAAVGSGKEISVPANLIALDCERITPE LLPLANLSQTTIDRLVATVPGGVRNVQDIYPLAPLQEGILYHHLAAEQGDPYVLQSQFAF DNREHLDAFIGALQVVIDRHDILRTSIVWEGLDEPMQVVRREARLHLETLDLDPVAGDVA EQLRQRFDSRHYRLDIAQAPLMRLAYGRDEANHRLVATLLFHHLALDHTALEVVQHEMQA YLLGEAGQLAEAVPYRNYVAQARLGVNREEHEAFFRDMLGDIDEPTLPFNLQDVQAGGHD IEEAHQALDDALDQRLRAQARQLGVSAASLVHLAWAQVLAKVSGKQEVVFGTVLMGRMQG GEGADRALGMFINTLPLRVTLGEQGVKAGVKAVHGQLTALLGHEHASLALAQRCSGVAAP LPLFSALLNYRHAATTTSNEVSSAWSGMQALGGEERTNYPLTLNVDDLGTGFNLTVLVGQ EIGAQRICAYMHAALQTLVLALEQTPQAALHRLSILPAAEIEQLLVTFNATEADYPQQQT IHGLFEEQVQRTPEAVAVIRGEQRLSYGELNERANRLAHYLRKQGVKPDSRVAICVERGI DMVVGLLAILKAGGGYVPLDPAYPLDRIAYMLEDSAPAAVLAQDATVGLLSDASMAVINL DSGDWQDESVQNPEVTELTSSHLAYVIYTSGSTGLPKGVMIEHRNTVNFLTWAHRSFDSQ TLAKTLFSTSLNFDLAVYECFAPLTSGGSIEVVTNVLELQQGEHDITLINTVPSALKALL ESGGLGEGVDTVNVAGEALKRSLVETLFEQTQVKRLCNLYGPSETTTYSSWVSMAREDGF AAHIGKPVANTQFYLLDEHKQPVPLGVPGEIYIGGAGVARGYLNRDDLTAERFLKDPFST APNARMYKTGDLGRYLPDGNIEYLGRNDDQVKIRGFRIELGEIEAKLAQAPNIKETVVLA REDVPGDKRLVAYFTQHSPVDIEALRTHLQAQLPAYMVPVAYVRLEALPLTPNGKLDRKA LPAPDLDAVITRGYEAPQGEVEISLAQIWQDLLKVERVGRHDHFFELGGHSLLAVSLIGR MRQLGLSADVRVLFSQPTLAALAAAVGSGGEVVVPDNGILLGCTRITPSMLPLVALDQQD IDRLVETVPGGARNVQDIYPLAPLQEGILYHHIAAHTGDPYVLQATFTVADRERLEAFAQ ALQGVIDRHDILRTSVVWEGLDEPVQVVWRKAQLAVEELVLSAEAGDIAGQLRERFDTLH YRLDMQQAPLMRIAFAHDPANQRWVAMLLFHHMVLDHTALEVVQHEMQAHLLGQADQLGQ AVPFRNYVAQARLGVSREEHEGFFRDMLSDVDEPTLPFGLLDVRGDGSDIEEAGLSLPAD LSRRLRAQARQLGVSAASLHHLAWAQVLGQVSGKQDVVFGTVLMGRMQGGDGAEHALGMF INTLPLRVGVGAQGVRDGVKATHARLTGLLGHEHASLALAQRCSGVVAPMPLFNALLNYR HSAAGVASNEALVAWDGIQLLSNEERTNYPLTLSVDDLGEAFHLSALAVPQVGAQRICAY MNIALEHLVEALEQAPQTPLHSLSILPPAERRQLLVDFNATTRSYPQDRTVHGLFEARAK ELPEATAVVHNGHSLTYAELNRRANCLTRHLIGLGVQPGDRVAILLERSVGLLVSQLAIL KCAAVYVPLDVSAPLERQDFMVRDSGARTLLTLSAMAVPEGIARVDLDSVVLETEADHDL RLIQSTESVAYIMYTSGSTGTPKGVLVPHRAINRLVINNGYAEFNAQDRVAFASNPAFDA STLDVWAPLLNGGCVVVVDQDVLLTQERFAALLQEQSVSVLWMTAGLFHQYAAGLMSVFA QLRYLIVGGDVLDPAVIGRVLKEGAPQHLLNGYGPTEATTFTTTHEIKSVGEGGIPIGRP IGNTRVYVLDANRQPVPIGVAGELYIGGDGVAKGYLNRPELSAEKFVADPFNADPGALLY RTGDLARWRADGAVDYLGRNDDQVKIRGFRIELGEIEARLGECPGVKDAVVLARQDDAGP KRLVGYVIPEPGVTLSVHALREQLSSVLADYMLPSAFVVLPAFPLTANGKLDRRELPAPD AEAYASREYEAPLGKVEQTLAQIWADVLKVEQVGRHDHFFELGGHSLLAVTLIERMRQAG LSADVRVLFSQPTLAALAAAIGSGREVSVPPNLIPLHCEHITPDLLPLINLSQDAIDRLV ATVPGGARNVQDIYPLAPLQEGILYHHLAAEQGDPYVLQSQFAFDNRERLDAFIGALQMV IDRHDILRTSVLWEGLDEPVQVVWRQVLLESQCIVPDATAGDVATQLANRFDARHYRLDL GRAPLLQLAYARDEAQDRWVAILLFHHMALDHTALDVMQHEMQMHLLGQGEQLGAAMPYR NYVAQARLGTSEQEHETFFREMLGDIDEPTLPFGLQDVQGEGHGIDEDRQPVDLALSRRL RVQARHLGVSAASLVHLAWAQVLGKVSGKQEVVFGTVLLGRMQGGDGADRALGMFINTLP LRVDVGTQDVRSGVKATHGRLTALLGHEHASLALAQRCSGVVAPTPLFSALLNYRHSAVQ VTQDALSAWSGINALGGDERTNYPLTLNVDDLGDGFFLTVMVDTAIGAQRICGYMQVALE NLVMALEQAPQTPLHALAILPSAERRQLLETWNTTDVTYADDALIHRQFEGWAASQPDTV AVVHEEQALTYGELNARANQLAHSLVALGVRPDDRVAICVERGLDMIIGLLGILKAGAGY VPLDPTYPPERIAYMLHDSSPVAVVTQSQWRDSLPVLPVPTLVLDPTDAGEMNQQPRHNP DVADLNASHLAYVIYTSGSTGLPKGVMVEHRNVARLFSATQPWFEFGPQDVWALFHSFAF DFSVWEIWGALTHGGRLLVVPQLVSRSPQYCYALLCEAGVTILNQTPSAFRQLIAAQGES DLSHSLRQVIFGGEALETGILKPWYARQANARTQLVNMYGITETTVHVTYRPLDAADAQL AGVSPIGKRIPDLQLYVLDTQREPVPVGVTGEMYVGGGGVSRGYLNRDELTAERFLDNPF SPEPNARMYRTGDLGRWLADGSIEYLGRNDDQVKIRGFRIELGEIEAKLAACNGVREAVV VARQDTPGDQRLVAYVIAEEGEPPSAAELRDELLGSLAEYMVPSAFVMLTVFPLTTNGKL DRKALPVPDQSSVVTREYEAPQGEVEIAIARIWQDLLHVERVGRHDHFFEMGGHSLLAVK LVERMRQIDLAADVRVLFGQPTLAALAAAVGGCQEVQVPANLIPDDCSRITPDLLPLATL SQDEIDRVVATVPGGVGNVQDIYALTPLQEGILYHHVAAAKGDPYLQYILFAFDSRARLD LFAKALQSTVSRHDILRTGVVWEGIDEPVQVVWREARLGFDEIMLDPAAGDIARQLRERL DPRHYRLDIRQAPMMRIGYAQDVANDRWVGMLLFHHMVDDATSLAMLAAEIGAHMSGGEQ ALAASVPYRNFVAQARLGVSREEHEAFFHEMLGDVAEPTLPFGLQDVQGDGHDIEEVRQR VDAELGQRLRVQARQLGVSAASLYHLAWALVLGKVSGKEDVVFGTVLLGRMQGGEGADRA LGMFINTLPLRVSLGAQGVRAAVKSTHARLTALLGHEHASLVLAQRCSGVAAPTPLFSAL LNYRHLGAQAPSSEVIAAWEGIQTLEGEERTNYPLTLSVDDLGEGFNLTVMAQAPIGAER VCNYVQCVVENLVQALEQSPLAPLSGLKILPPAERRQLLESWNGTGVAFAQDALIHAQFE VWAAAQPEAMAVMFEERTLTYSELNARANQVAHRLLAQGIRPDDRVAICVERGLDMIVGL LGILKAGAGYVPVDPAYPTERIAYMLRDSMPVALLAHAATHRLLAGVSMPVLQLDDGSWQ DESVANPQVPGLDSSHLAYVIYTSGSTGLPKGVMVEHRNVARLFSATQPWFDFGQQDVWA LFHSFAFDFSVWEIWGALTHGGRLLVVPQLVSRSPQDCYALLCETGVTVLNQTPSAFRQL IVAQGESDLRHSLRQVIFGGEALETGMLKPWYARVGNAGTQLVNMYGITETTVHVTYRAL EAADAQSTGVSPIGKRIPDLQLYVLDAQREPAPVGVVGEMYVGGAGVSRGYLNRDELTAE RFLDNPFSPEPNARMYRTGDLGRWLADGSIEYLGRNDDQVKIRGFRIELGEIEATLAACE GVSEAVVIAREDEPGDKRLVAYVIATEGAQPSAVDLRTQLLRSLAEHMVPSAFVILDAFP LTTNGKLDRKALPAPDQSAVISREYEAPQGEVETTIARIWQDLLKLGRVGRHDNFFELGG HSLLAVKLIERMRQVDLAADVRVLFGQPTLAALAAAVGGVREVVVPGNAIADGCTRITPD MLPLADLDQDAIDRIVATVQGGVTNVQDIYALAPLQEGILYHHLAAEQGDPYVLQVLFGF DNRERLQAFAQALQSVVSRNDILRTSMVWQGLEAPVQVVWRHATLGLEEIEVDPAGGEVV QQLHGRFDPRHYRLDIAQAPLMRFAFAQDVANQRWVGMLLFHHMALDHTALEVVVHEMQA SLLGQAHLLSPAVPYRNHVAQARLGVSREQHEAFFREMLGDIDEPTLPFGLQDVQGDGSG IEEAHQDVDAALAQRLRAQARQLGVSAASLVHLAWGHVVGRVSGREEVVFGTVLMGRMQG GDGADRALGMFINTLPLRVSVGAQGARAGVKATHGRLSALLGHEHASLSLAQRCSGVPTS LPLFSTLLNYRHSAAEAVSDQAISAWQGMQTLHMEERTNYPLCLNVDDLGEGFRFTAQAV VEVGAQRVCGYMHTALESLVAALEQTPERALRELPIVPAAEREQLLVDFNATHADYPQEQ TIHGLFEAQVLRTPDAVAVRHGRHQLNYRELNGLSNRLAHYLRKQGVEPDSRVAICVERG IEMVVGLLAILKAGGGYVPLDPAYPLDRIAYMLEDSAPAAILVQGTTRNLLGETAIPVID LDKGIWQDEAAPNPQVPGLSSSHLAYVIYTSGSTGLPKGVMIEHRNTVNFLTWAHRSFDA QILSKTLFSTSLNFDLAVYECFAPLTSGGSIEVVTNVLELQQGEHDITLINTVPSALKAL LESGGLGEGVDTVNVAGEALKRSLVETLFEQTQVKRLCNLYGPSETTTYSSWVSMAREDG FAAHIGKPVANTQFYLLDEHKQPVPLGVPGEIYIGGAGVARGYLNRDDLTAERFLKNPFS TAPNARMYRTGDLGRYLPDGNIEYLGRNDDQVKIRGFRIELGEIEAKLAQHDALKEAVVV AREDVPGDKRLVAYFTQHSPDETVEIEALRTHLQTQLPAYMVPAVYVRLDALPLTPNGKL DRKALPAPDLDAVISRGYEAPQGEVETTLAQIWQDLLDLQQVGRHDQFFELGGHSLLAIQ LISQVRLRLGVELGLTELFAQPQLMGLAQAVALAGRSTLPEIVRVSRKDDLPLSFAQQRL WFLAQMEGASAAYHIPAGLRLRGVLDRLALQRALDRIVARHEALRTTFVQVRGQEARQCI APVDVGFALLHHDFCGLADAEGQLHALAAQEATDTFSLEQGPLIRGRLVRLGSEDHVLLL TMHHIVSDGWSIGVLIKELTALYEAFRHDLDDPLPALTVQYSDYAVWQRRWLSGEVLQTQ SDYWRQALADAPALLMLPTDRARPAQQDYAGATLPVVFDADLTASLKALSQRHGVTLYMT MMAAWGALLSRLSGQDEVVIGSPVANRTRSEVEGLIGFFVNTLAVRIDLSGAPTVETLLA RVKAQALGAQAHQDLPFEQVVEVLKPVRSLAHSPLFQAMLSWQTHDNTELVLGDLKLEGL GAASNVAKFDVSLELSEIQGQMFGALEYATALFDEGTVQRYLGYFQRLLRAMVASDQTRI ERIALLDNAEREHLLAGLNATQAAYPREQTIHQLFEAQVEARPDAIAVAFGDERLSYAEL NRQANQMAHHLIGLGIRPDDRVAICVERGADMLIGLLAILKAGAGYVPLDPAFPAERLAY MLADSAPVALLSQGELLDRLPAFTVPVVLLDRAERVRCGIAAGRDDNPLVASLGVRHLAY VIYTSGSTGNPKGVMIEHRGLVNYCVDAVRLFGLTPDDTVLQQNTLNFDLSVEEIFPALL AGATLAPTRQLFGSAELQQNGDIRPTFLHLTAAHWHTLAAEWHNSPAQARDYLRDVRLIN VTGDALSTQKLQMWDAVRPAHTRLVNTYGPTEATVSCTAAYMEHDAVDGILGNASIGRPM ANTRIYLLDAHRQPVPFGVAGEIFIGGDGVARGYLNLDAINAERFLADPFSDQPDARLYK TGDLARYRPDGRLEYLGRNDFQVKVRGFRIELGEIEARLGDCAGVKEAAVIVREDTPGDK RLVAYVVPQAGVNLNAASLRAQLAVQLAEYMLPGAFVSLAALPLTPNRKLDRQALPAPDA EAYASRTHEAPQGHTEIVLAQIWQSLLKVESVGRHDHFFELGGHSLLVMRLIAQVREQLG VELNLRDVFAQPQLSALAQVLSQAAHSTRPGIVPVSREQALPLSFAQQRLWFLAQLDGTS AAYHIPTGLRLRGALDTSALTRALDRIVARHEALRTTFVQAQGQEVEQRIAPVDVGFALR LQALAGRADAETELMALAEEEARQAFDLAHGPLVRGRLVRMADDDHVLVVTLHHIVSDGW SADLLTHELGVLYEAFRQGQDDPLPALPIQYADYALWQRRWLTGEVLDQQERFWRQTLAD APALLTLPTDRPRPAQQDHAGAAVGIVLDETLTQGLKALSQRHGATLFMTVMAAWATVLS RLSGQHDVVIGTPVANRMQAEVEGLIGLFVNTLALRVDVADELTVQALLQQVKVRTLDAQ AHQDLPFEQVVEVVRPLRSLSHSPVFQAMLSWQNNEATGLELGDMSLQGLGVTSRTAKFD VLLDMALIDGRLFGALEYATALFDSATMERYLGYLESVLRAMVADEQTLVAQIPLLGDNE RQNLLETLNATAVDYPQGLTLHGLFEARVVASPDAVAVVSGEAQLSYAQLNERANQIAHR LLELGIRPDDRVAICADRSLDMVAGLLGILKAGAAYVPLDPDYPHERLAYMLENSAPMVV LTQRALQASLPATQARTLLLDEAQGFSTQPTDNPQVEGLHAHHLAYVIYTSGSTGLPKGV MNEHGGVVNRLLWMQDEYGLTATDAVLQKTPFSFDVSVWEFFWPLFSGARLVMARPGGHR DPAYLREVIQAQGITTLHFVPSMLDVFLAHGEASQCAGLVRVMCSGEALPGHLVRRFKAQ LPHTGLYNLYGPTEAAVDVTAWDCAGTDTPDSTPIGKPIANTRIYLLDGHQQPVPMGVAG EIYIGGVQVARGYLNRPELTVERFLRDLFSRAANARMYRTGDLGRYLPDGNIEYLGRNDD QVKIRGFRIELGEIEAKLAQHEAIKEAVVLALEDVPGAKRLVAYFTVHGDEHSVEIENLR TQLQAQLPEYMVPAAYVRLQALPLTPNGKLDRKALPAPDLASVITREYEAPQGAVETTLA QLWAELLKVEKVGRHDHFFELGGHSLLAVTLIERMRQAGLSADVRVLFGQPTLAALAAAV GGTTEIVVPDNGIVPGCERITPQMLPLADLTQQEVDAIVAWVPGGVSNVQDIYALAPLQE GILYHHLVSSQGDLYVQQAMFNLEDRARLDAFVSALQGVIDRHDILRTAVLWEGLREPVQ VVLREAPLAVQTCTVEPGEDVATQLRERFDPRHSRLDVRQAPMMRLACAYDDEHQRWVAL LLFHHIALDHTALEVIQHDMQAYLLGQQAQLGDAVPYRNYVAQARLGVTQSAHEAFFRDM LQDIQEPTLPFGLQDVQGDSHVIEQARLGVDDSLNRRLRTQSRLLGVSAASLHHLAWARV VGAVSGRENVVFGTVLMGRMQGGEGADRALGLFINTLPLRVDVGVDGARAGVKATHARLT ALLGHEHASLALAQRCSGVATSTPLFSALLNYRHTATQVTEEAQSAWNGIEGLGGEEWSN YPLSLNIDDLGEAFVLTALAESRIGAERICGYMHTALESLVDALERTPEAPVRELAILPA AERRQLLVDFNATDTVYPREETVHGLFEAQVRARPDAIALQHGAQQLTYRELHERANHLA HCLLERGVQPGSRVAIMLNRSFELIISELAILKCAAVYVPLDHHAPEERQRFMLQDSAAV LVLTTRDRALPEDMPRLDLDTLQLIQAARPAVFPGQTSDTPAYIMYTSGSTGHPKGVIVP HLAIGRLAINNGYADFGVQDRVAFASNPAFDASTMEVWGALLNGGRVVIIDHETLLSPTQ FAQALTEAEVSVLFVTTAMFNQYLVLIPDALAGLRILLCGGERGDPASFRRLLAHAPSLR LVHCYGPTETTTFATTHVVSAVPHGATSVPIGRPIANTRVYILDAARQPVPVGVAGEIHI GGVGVALGYLNRPDLTEERFIADPFSDSGSARLYRSGDLGRWLPDGTIEYLDRNDGQVKI RGFRIELGEIEARLHECHGVREALVVAREDSPGDKCLIAYYTEHENGGDLDADVLRAQLR SVLPEYMIPAAYVRLTALPLTLNGKVNTGALPVPEMHAYGSQDYEAPQGDLEVTLAGLWA DVLKLEQIGRHDNFFELGGHSLLAIRLVGLLAQANLTVSLAELFQHESVASMASMLLART EDARVKEAIVPVRTTGQQNPLFLVHEFSGLDLYFPMLGKHIDPDIPVYGLPAVEWGEPQL QTMECMASRLVGIIRSVQPKGPYRLAGWSFGGVLAYETAIQLIGLDEEVEFVGLIDSYLP RLVDQGRSRWALDEAHKLHLLDRCDVFWRAALPGEEVLAVMLENLADLQGQLDRFDFTGL VQHCRDEALLPAELAVYSAEQLWQYLDREVAHGHALAHYAVYPISVPVHLLVAEERKDDA PEHSGYLGWDAVLPTSKLHCIKVPGNHQSMMQAPHVKALGQAITAALHTAASRPAPSPKS GYQPLLTIQGGRTDRAPIFCVPGAGDSVTGFIGLTDAFGPDWPIHGLQHRGLDGSTEPFS LVETAAQVYLDAIDKVQPEGPVHLLGHSFGGWIVFEMAARLHARGRKVASLTLIDSESPG GNGVVGKPYTATGVLNRLIEAMQLASGKSLGIDATVFGTQDDTAQMRLLHAGMVRAGMLP QRSAVDSMRGPARAFGTALRTVYQPQHRYTGPVRLVLADDPTLDTAGNKREQEQMIEGWR KHIPDLSIWYGPGNHFTILKAPHVHNLAAWWQDGLPMLDEEAASDYV
Lawrence Berkeley National Laboratory