PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_28505 AO356_28505 sugar ABC transporter substrate-binding protein (333 amino acids)

SeqID: AO356_28505 AO356_28505 sugar ABC transporter substrate-binding protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 586265: D-xylose-binding periplasmic protein precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_28505 AO356_28505 sugar ABC transporter substrate-binding protein
MKTFKRTLLAGALALLSLPVMADAAHPKIGFSIDDLRLERWSRDRDYFVAAAEKLDAKVF
VQSADANEQKQISQIENLISRGVDVIVIVPFNATVLTNAVAEAKKAGIKVVSYDRLILNA
DIDAYISFDNEKVGEMQASGVLKAAPKGNYFLLGGAPTDNNAKVLREGQMKVLQPAIDKG
DIKIVGQQWVKEWNPTEALSIVENALTRNNNKIDGIVASNDATAGGAIQALAAQKMAGKV
PISGQDADLAAVKRVIDGTQTMTVYKPLKLIASEAAKLSVQLARNEKPTFSSQYDNGSKK
VDTILLTPTPLTKDNIDLLEKDGFYTKAQIAGQ