PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_28845 FitnessBrowser__pseudo5_N2C3_1:AO356_28845 (251 amino acids)

SeqID: AO356_28845 FitnessBrowser__pseudo5_N2C3_1:AO356_28845
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 119898: Iron(III) dicitrate transport ATP-binding protein fecE]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_28845 FitnessBrowser__pseudo5_N2C3_1:AO356_28845
MVTIRLENLGARYGQRTVIHGVTTAAFVGGQVVAVVGPNAAGKSTLFKRMAGLIDGPGQV
ILEGSKKGPQGISYMPQGLNASARLTVYESVLLARKQLTPGWVVHDDELKRVDDILAALG
ITELSFRNLGELSGGQQQLVSIAQTLVREPEILLMDEPTSALDMHRQVQVLNFMRALARK
RQVIVFIAIHDLNQALRFADQVLVIADNTAQGSGPSAEVITESMLRQVYKVEARIEQCSR
GERHILIDDIV