PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_30050 FitnessBrowser__pseudo5_N2C3_1:AO356_30050 (780 amino acids)

SeqID: AO356_30050 FitnessBrowser__pseudo5_N2C3_1:AO356_30050
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2498933: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_30050 FitnessBrowser__pseudo5_N2C3_1:AO356_30050
MNAPRVSSPREPGLFARAPALERYRVAAGGLTLVALQPGDSLQVIDLEGRQPCELLAVDR
LGRSALAAWALSGSTACRFIGARLNEPTLQARRICQALSQRGIDPQHLPSAASLWDEDSP
ADFSRHFVASDELLVIIAAPAGPTAVDRQYRPSELRSWVTRANPSPLLLPALPEPLGELI
DEFTIGAGTAHSYTVGKGQYVQVLDVAGRQCSDFVALDRRALDRGQELDLDQTVTRTLNG
SAYPAPGLFSKFFDRQMQPMLEVVRDTVGRHDSFALACAARYYESHGYFGHDNCSDNLNR
VLAPHGIKARNGWPAINFFFNTGIDAHQQMTLDEPWSRPGDYVLLRAMTDLLCGSTSCPD
DIDPANGWNPTDIHVRIYSEKERFSIAMSTRTTADADPILTRESAFHSRTSALTGSFIDY
RNWWLPLRYDGYGAIEEYLGCRERVAVMDLTALRKFEIIGPDAEALLQYCLTRDVRRLAV
GQVVYSAMCHEHGGMLDDGTLLRLGPDNFRWICGEDYAGVWLREQAQKLGMKVWVKSASE
QIHNLAVQGPMSRELLKQMVWTPPTQPSLETLGWFRFLVGRLDGYDGCPLMISRTGYTGE
LGYEVWCQPEDAEQVWDRIWQLGQPLGLVPLGLEALDMLRIEAGLIFAGYEFNDQTDPFE
AGIGFSVPLKSKTDDFIGRDALLRRSAHPAHKLVGLQLSGNEGAHHGDPVYRGRAQVGVI
TSACRSPLLASNIALCRVDVACADVGTTLEIGKVDGLQKRISATVTAAIFYDPDKSRVRS