PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS00105 FitnessBrowser__azobra:AZOBR_RS00105 (378 amino acids)

SeqID: AZOBR_RS00105 FitnessBrowser__azobra:AZOBR_RS00105
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599715: ornithine decarboxylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS00105 FitnessBrowser__azobra:AZOBR_RS00105
MTDKIARFFEEQRPQTPCLVVDLDVVEANYHDLEEALPDAKIFYAVKANPAPEILGLLTR
LGSAFDTASVPEIQMVLAAGCAPERISYGNTIKKEADIRRAFELGVRLFAFDSEAELEKI
ARAAPGARVFCRILTSGEGAEWPLSRKFGCDLAMARELLLKAKGMNVVPYGVSFHVGSQQ
KDLMQWDHAIFQVAQLFRELEVLGVDLGMINLGGGFPTRYRTDVPETTAYGQAIFESLRT
HFGNRLPEAIVEPGRSMVGNAGIIESEVVLVSRKSANDVKRWVYLDIGKFSGLAETMDEA
IQYPIQVMGDDGEGDSEAVVLAGPTCDSADVLYERAEYKLPMDLKAGDRVRIHATGAYTT
TYSAVCFNGFAPLQQICI